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Autodock 4.2 for mac os software#
ADT is an easy-to-use graphical front-end to theautomated docking software packages AutoDock and AutoGrid. Take a look at both the ADT Tutorialand PMVTutorial. PMValso offers an extremely useful 'Undo' command for most operations.ĪDT,also known as AutoDockTools, consists of 5 specialized modules for PMV, so learning about PMV helps to understandwhat is possible with ADT. This log fileis a pure Python script which can be edited and/orsourced at a later time, to re-do these earlier operations. While the theuser accesses PMV commands viathe menus of its Graphical User Interface, PMV records these operations in a file called' '. PMV has a sophisticatedselection mechanism based on its four level hierarchical data structure: Molecules are at the top and contain Chains, which contain Residues, whichconsist of Atoms.PMV is written in Python, an interpreted,object-oriented language that is easy to learn.
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Molecules can becolored and rendered in various ways, including as secondary structure ribbons or as molecular surfaces. PMV is the Python Molecule Viewer, whichallows one to view molecules and rotate them in 3D. Please note that AutoDock and AutoGrid are not included - they are distributed via a separate mechanism. USING PMV, ADT and VISION after installation(Linux, SGI) This distribution contains a pre-compiled Python interpreter (version 2.4), numerous Python packages(Pmv, AutoDockTools, DejaVu, MolKit, ViewerFramework, Vision, NetworkEditor), platform dependent packages (mslib, opengltk, bhtree, gle, stride, sff, UTpackages), which comprise the PMV, ADT and VISIONapplications. Thank you for downloading our tools and packages.